NA ----> NA
Intron 1 GCATTCGTAG ... CTTCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.76 | 4 | 14 | 11 |
| A2 | 75.44 | 7 | 23 | 20 |
| A3 | 55.56 | 6 | 12 | 3 |
| A4 | 75 | 1 | 2 | 4 |
| A5 | 58.33 | 5 | 9 | 5 |
| A6 | 73.91 | 21 | 73 | 46 |
| A7 | 67.68 | 16 | 39 | 28 |
| A8 | 78.16 | 19 | 72 | 64 |
| A9 | 68.42 | 27 | 65 | 52 |
| A10 | 57.14 | 30 | 55 | 25 |
>TRINITY_DN48923_c4_g1_i3 from sample A10 / Example spliced isoformAATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAGTGAAATTATTACCGACCGTTTTACTTCTAGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAAGCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGATG
AAGAGTTCAACATATCCATTGAACTACATATGTCAATGGTTCTTCCCT
>TRINITY_DN48923_c4_g1_i4 from sample A10 / Example unspliced isoform:AATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAATGAAATTAGGACTGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAATCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGgcattcgtagttatagcag
tctttcttcacacagATGAAGAGTTCAACATATCCATTGAACTGTATATGTCAATGGTTCTTCCATCTTCTAGGCGTTCTTTTAGTGCAGGTTTATGAAACTGATTTTCTGTTACAGCAATTGTATTGGGAAGACATGGGTGTCACTTGATGCCATAACCAAAGACAGGTAATTTATCATTAAGCGCAGACTATTTGAAG
CATGCAACCTTGTGATATACATGATGAGTCGAAAAGCATTGTTAAGTCAAGGTGACAAGTGCCAACTCTGCTTTCCAATAGATGAAGAGTAGATCATAGTAGAGCAATATTTGGTAGTACTGGCCTTTGTTGTACCAGAATTTGGCAGTAGTACAAAAATAGCGAAATTTCCATATAGTATGGATATGGTATGCTCAACT
TACTTTTGATTGTCTTTGATAATATACCTCGTGTATTTGATACCTGTTGATCCATAAACCCCCCAAAACAGCTCAAAAACCTCAAAAATATTTTAAAATATCCTAAAGACACTTGTAAATATAATTAAGTTGTCAAATTTTCAAGGAAAGCATTAGATTTTCTGATTTATTGGGCATTCAAGAGGTTGAATTTCTTTCTT
CTAAAATTTGGAACAAAATGCATATTTTTTGTATCTGCGAGATACATACGAGTATGGAGCCATACTGAAATTTTTCATTACATGTATTTCCTGTATTGAATCATCTTTAAATTTGTTTTTAATTTGAATCTTGCTACTATGCTTTACACGTATTGGAACCATACATAATCTATGTTGTATTAACGGATTTTATTTGATGT
GTCAGTATTCTTTAGTGTTTCTTACGAAAACCTTATTGATAAATTATCTTCTGGACATGTCACATGGCATAGCTCCTATAAAGTCAGATCAGATGGTGTTTTATCAATGAGTTTGAATACTAAGATACTTAGAAGCAATGATGATAAGCCCAATTATGTGATTTTGATGATAAGCCCAATTATGTGATTTTGATGATAAG
CCCAATTATGTGA
Intron 2 GTTTGTGCTC ... CTTCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.33 | 4 | 8 | 14 |
| A2 | 67.44 | 7 | 11 | 18 |
| A3 | 63.64 | 6 | 15 | 6 |
| A4 | 88.89 | 1 | 3 | 13 |
| A5 | 54.55 | 5 | 5 | 7 |
| A6 | 62.5 | 21 | 37 | 33 |
| A7 | 63.64 | 16 | 26 | 30 |
| A8 | 69.35 | 19 | 38 | 48 |
| A9 | 59.4 | 27 | 41 | 38 |
| A10 | 50.41 | 30 | 44 | 17 |
>TRINITY_DN48923_c4_g1_i3 from sample A10 / Example spliced isoformAATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAGTGAAATTATTACCGACCGTTTTACTTCTAGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAAGCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGATG
AAGAGTTCAACATATCCATTGAACTACATATGTCAATGGTTCTTCCCT
>TRINITY_DN48923_c4_g1_i5 from sample A10 / Example unspliced isoform:AATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAGTGAAATTATTACCGACCGTTTTACTTCTAGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAAGCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGgtt
tgtgctcttctgccatgatgaaatttattatactgcaggcttcttttcaaggctcttaatgggaattgttttaaaatattgagcttttcgtactgccttcactgatggtactgcttctctgttgttttaattcctgtgtattgttgaggttgttgcactgattttttgagacaatgattctgttctggcagtataatttt
tggtgcaggcattcgtagttatagcagtctttcttcacacagATGAAGAGTTCAACATATCCATTGAACTGTATATGTCAATGGTTCTTCCATCTTCTAGGCGTTCTTTTAGTGCAGGTTTATGAAACTGATTTTCTGTTACAGCAATTGTATTGGGAAGACATGGGTGTCACTTGATGCCATAACCAAAGACAGGTAAT
TTATCATTAAGCGCAGACTATTTGAAGCATGCAACCTTGTGATATACATGATGAGTCGAAAAGCATTGTTAAGTCAAGGTGACAAGTGCCAACTCTGCTTTCCAATAGATGAAGAGTAGATCATAGTAGAGCAATATTTGGTAGTACTGGCCTTTGTTGTACCAGAATTTGGCAGTAGTACAAAAATAGCGAAATTTCCA
TATAGTATGGATATGGTATGCTCAACTTACTTTTGATTGTCTTTGATAATATACCTCGTGTATTTGATACCTGTTGATCCATAAACCCCCCAAAACAGCTCAAAAACCTCAAAAATATTTTAAAATATCCTAAAGACACTTGTAAATATAATTAAGTTGTCAAATTTTCAAGGAAAGCATTAGATTTTCTGATTTATTGG
GCATTCAAGAGGTTGAATTTCTTTCTTCTAAAATTTGGAACAAAATGCATATTTTTTGTATCTGCGAGATACATACGAGTATGGAGCCATACTGAAATTTTTCATTACATGTATTTCCTGTATTGAATCATCTTTAAATTTGTTTTTAATTTGAATCTTGCTACTATGCTTTACACGTATTGGAACCATACATAATCTAT
GTTGTATTAACGGATTTTATTTGATGTGTCAGTATTCTTTAGTGTTTCTTACGAAAACCTTATTGATAAATTATCTTCTGGACATGTCACATGGCATAGCTCCTATAAAGTCAGATCAGATGGTGTTTTATCAATGAGTTTGAATACTAAGATACTTAGAAGCAATGATGATAAGCCCAATTATGTGATTTTGATGATAA
GCCCAATTATGTGATTTTGATGATAAGCCCAATTATGTGA
Intron 3 GTTTGTGCTC ... TTTGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 14 | 8 | 13 |
| A2 | 33.33 | 23 | 11 | 12 |
| A3 | 46.67 | 12 | 15 | 6 |
| A4 | 78.95 | 2 | 3 | 12 |
| A5 | 37.93 | 9 | 5 | 6 |
| A6 | 30.81 | 73 | 37 | 28 |
| A7 | 43.88 | 39 | 26 | 35 |
| A8 | 32.71 | 72 | 38 | 32 |
| A9 | 32.64 | 65 | 41 | 22 |
| A10 | 34.13 | 55 | 44 | 13 |
>TRINITY_DN48923_c4_g1_i4 from sample A10 / Example spliced isoformAATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAATGAAATTAGGACTGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAATCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGGCATTCGTAGTTATAGCAG
TCTTTCTTCACACAGATGAAGAGTTCAACATATCCATTGAACTGTATATGTCAATGGTTCTTCCATCTTCTAGGCGTTCTTTTAGTGCAGGTTTATGAAACTGATTTTCTGTTACAGCAATTGTATTGGGAAGACATGGGTGTCACTTGATGCCATAACCAAAGACAGGTAATTTATCATTAAGCGCAGACTATTTGAAG
CATGCAACCTTGTGATATACATGATGAGTCGAAAAGCATTGTTAAGTCAAGGTGACAAGTGCCAACTCTGCTTTCCAATAGATGAAGAGTAGATCATAGTAGAGCAATATTTGGTAGTACTGGCCTTTGTTGTACCAGAATTTGGCAGTAGTACAAAAATAGCGAAATTTCCATATAGTATGGATATGGTATGCTCAACT
TACTTTTGATTGTCTTTGATAATATACCTCGTGTATTTGATACCTGTTGATCCATAAACCCCCCAAAACAGCTCAAAAACCTCAAAAATATTTTAAAATATCCTAAAGACACTTGTAAATATAATTAAGTTGTCAAATTTTCAAGGAAAGCATTAGATTTTCTGATTTATTGGGCATTCAAGAGGTTGAATTTCTTTCTT
CTAAAATTTGGAACAAAATGCATATTTTTTGTATCTGCGAGATACATACGAGTATGGAGCCATACTGAAATTTTTCATTACATGTATTTCCTGTATTGAATCATCTTTAAATTTGTTTTTAATTTGAATCTTGCTACTATGCTTTACACGTATTGGAACCATACATAATCTATGTTGTATTAACGGATTTTATTTGATGT
GTCAGTATTCTTTAGTGTTTCTTACGAAAACCTTATTGATAAATTATCTTCTGGACATGTCACATGGCATAGCTCCTATAAAGTCAGATCAGATGGTGTTTTATCAATGAGTTTGAATACTAAGATACTTAGAAGCAATGATGATAAGCCCAATTATGTGATTTTGATGATAAGCCCAATTATGTGATTTTGATGATAAG
CCCAATTATGTGA
>TRINITY_DN48923_c4_g1_i5 from sample A10 / Example unspliced isoform:AATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAGTGAAATTATTACCGACCGTTTTACTTCTAGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAAGCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGgtt
tgtgctcttctgccatgatgaaatttattatactgcaggcttcttttcaaggctcttaatgggaattgttttaaaatattgagcttttcgtactgccttcactgatggtactgcttctctgttgttttaattcctgtgtattgttgaggttgttgcactgattttttgagacaatgattctgttctggcagtataatttt
tggtgcagGCATTCGTAGTTATAGCAGTCTTTCTTCACACAGATGAAGAGTTCAACATATCCATTGAACTGTATATGTCAATGGTTCTTCCATCTTCTAGGCGTTCTTTTAGTGCAGGTTTATGAAACTGATTTTCTGTTACAGCAATTGTATTGGGAAGACATGGGTGTCACTTGATGCCATAACCAAAGACAGGTAAT
TTATCATTAAGCGCAGACTATTTGAAGCATGCAACCTTGTGATATACATGATGAGTCGAAAAGCATTGTTAAGTCAAGGTGACAAGTGCCAACTCTGCTTTCCAATAGATGAAGAGTAGATCATAGTAGAGCAATATTTGGTAGTACTGGCCTTTGTTGTACCAGAATTTGGCAGTAGTACAAAAATAGCGAAATTTCCA
TATAGTATGGATATGGTATGCTCAACTTACTTTTGATTGTCTTTGATAATATACCTCGTGTATTTGATACCTGTTGATCCATAAACCCCCCAAAACAGCTCAAAAACCTCAAAAATATTTTAAAATATCCTAAAGACACTTGTAAATATAATTAAGTTGTCAAATTTTCAAGGAAAGCATTAGATTTTCTGATTTATTGG
GCATTCAAGAGGTTGAATTTCTTTCTTCTAAAATTTGGAACAAAATGCATATTTTTTGTATCTGCGAGATACATACGAGTATGGAGCCATACTGAAATTTTTCATTACATGTATTTCCTGTATTGAATCATCTTTAAATTTGTTTTTAATTTGAATCTTGCTACTATGCTTTACACGTATTGGAACCATACATAATCTAT
GTTGTATTAACGGATTTTATTTGATGTGTCAGTATTCTTTAGTGTTTCTTACGAAAACCTTATTGATAAATTATCTTCTGGACATGTCACATGGCATAGCTCCTATAAAGTCAGATCAGATGGTGTTTTATCAATGAGTTTGAATACTAAGATACTTAGAAGCAATGATGATAAGCCCAATTATGTGATTTTGATGATAA
GCCCAATTATGTGATTTTGATGATAAGCCCAATTATGTGA
Intron 4 GTTTGTGCTC ... GTTCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.96 | 5 | 8 | 9 |
| A2 | 52.38 | 10 | 11 | 11 |
| A3 | 54.29 | 8 | 15 | 4 |
| A4 | 88.24 | 1 | 3 | 12 |
| A5 | 47.37 | 5 | 5 | 4 |
| A6 | 40.8 | 37 | 37 | 14 |
| A7 | 57.78 | 19 | 26 | 26 |
| A8 | 49.58 | 30 | 38 | 21 |
| A9 | 47.75 | 29 | 41 | 12 |
| A10 | 42.15 | 35 | 44 | 7 |
>TRINITY_DN48923_c4_g1_i13 from sample A10 / Example spliced isoformAATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAATGAAATTAGGACTGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAATCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGTATAATTTTTGGTGCAGGC
ATTCGTAGTTATAGCAGTCTTTCTTCACACAGATGAAGAGTTCAACATATCCATTGAACT
>TRINITY_DN48923_c4_g1_i5 from sample A10 / Example unspliced isoform:AATTAGTACATGAAGAAGAAGAGATTCAAAAAATAACCTAAACCATGCCCTTGAAGAAAAAATCATTAACTTATGTAATCCACATGTAGGAAGAATCTCAAATTTGAGATGATCACAGGTTCGCATATTACTACTGAATAAGGTAGAGGCGGCAGAGTGATATACAGAGGATAGAGGCGTCAGAGTGATATACAGAGGAT
ACATATAAGGAAATTAGAATCTAGGGCTCTGCATGGTTCTTCGGGGCTCTGCATGGTTTCCTCTATAAACATGAAAGAGAGAAAGACAGTATCCTTGAAAAGCAAGGCAAGGTTGAAATGAATTAGTACATAAATTAAAAGAAGAATGTAGTGATACACACTGTTATGTAGATACATAGAAGCCATGGATCTCCATTGTG
TAGAAGGCAGCCCAACCTCATCTGGCAGAGGTTTTTTCATAGCACAGCAGATTAGATTTTTGAAATCAATTCGCCTCCATTGCAGTGCACTCCACCCTCCTCAGCTATCACATACATTGTCAGGACTCATACACAGATAGAGTCAGGACTCATACACAGACTAGACAGGCGCACATACATACAGGAAGCTCAAATAGAAG
ATTAAGACAAGGAGGAAAATGTTTTGAAAGTGATGTAAGATTGAGATATATATAGGCGATTCCCTCCAGCAGAGGCACTTCTCCCACTTCCCTTCCTTCAACGGCCTTCAACGGATAGGAATAGGAGGCGGGCTGGGTAGATTAGACAAATTGCTTTTCCCTTTTTAAACTGACTGCTTTTTCTTTAAACTGACTGTTTT
TTCTTTTAACCGATAGAAAAGGGCTCTTTCCTCTCATTTGCACCAACCCTTTGCAGATGAGGCGAATTGCTTTTCCATTACTGAAATCACTGGTTTTCTCTCCCTGAACTTATAGACTTCGCTTTTCCGTCCCTGAACTCACTGCTTTTCTCTTTGCTTTTCCGTTCCTGAACTCACTGCCTTTTTCTCCCTGAACTAAC
TTTTGACAGAAAGATGAGTGAAATTATTACCGACCGTTTTACTTCTAGTTTCACTTCTCGAGAATGGAGAAAAAGAAGATCAATCCTGAAAGTGAAATTGCGTGCTACCAGCAATTAGAGAACAAGAAGGATTGAAGCCTCTGCGGCGGCATGCTGCACCTGAACTTCTGAACTTCTTTGTGGCATGAAATGACCAGgtt
tgtgctcttctgccatgatgaaatttattatactgcaggcttcttttcaaggctcttaatgggaattgttttaaaatattgagcttttcgtactgccttcactgatggtactgcttctctgttgttttaattcctgtgtattgttgaggttgttgcactgattttttgagacaatgattctgttctggcagTATAATTTT
TGGTGCAGGCATTCGTAGTTATAGCAGTCTTTCTTCACACAGATGAAGAGTTCAACATATCCATTGAACTGTATATGTCAATGGTTCTTCCATCTTCTAGGCGTTCTTTTAGTGCAGGTTTATGAAACTGATTTTCTGTTACAGCAATTGTATTGGGAAGACATGGGTGTCACTTGATGCCATAACCAAAGACAGGTAAT
TTATCATTAAGCGCAGACTATTTGAAGCATGCAACCTTGTGATATACATGATGAGTCGAAAAGCATTGTTAAGTCAAGGTGACAAGTGCCAACTCTGCTTTCCAATAGATGAAGAGTAGATCATAGTAGAGCAATATTTGGTAGTACTGGCCTTTGTTGTACCAGAATTTGGCAGTAGTACAAAAATAGCGAAATTTCCA
TATAGTATGGATATGGTATGCTCAACTTACTTTTGATTGTCTTTGATAATATACCTCGTGTATTTGATACCTGTTGATCCATAAACCCCCCAAAACAGCTCAAAAACCTCAAAAATATTTTAAAATATCCTAAAGACACTTGTAAATATAATTAAGTTGTCAAATTTTCAAGGAAAGCATTAGATTTTCTGATTTATTGG
GCATTCAAGAGGTTGAATTTCTTTCTTCTAAAATTTGGAACAAAATGCATATTTTTTGTATCTGCGAGATACATACGAGTATGGAGCCATACTGAAATTTTTCATTACATGTATTTCCTGTATTGAATCATCTTTAAATTTGTTTTTAATTTGAATCTTGCTACTATGCTTTACACGTATTGGAACCATACATAATCTAT
GTTGTATTAACGGATTTTATTTGATGTGTCAGTATTCTTTAGTGTTTCTTACGAAAACCTTATTGATAAATTATCTTCTGGACATGTCACATGGCATAGCTCCTATAAAGTCAGATCAGATGGTGTTTTATCAATGAGTTTGAATACTAAGATACTTAGAAGCAATGATGATAAGCCCAATTATGTGATTTTGATGATAA
GCCCAATTATGTGATTTTGATGATAAGCCCAATTATGTGA