NA ----> NA
Intron 1 GTATTTTTCT ... ATTTATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.57 | 24 | 31 | 96 |
| A2 | 73.53 | 18 | 32 | 68 |
| A3 | 65.52 | 25 | 22 | 73 |
| A4 | 79.52 | 17 | 43 | 89 |
| A5 | 69.62 | 12 | 22 | 33 |
| A6 | 100 | 0 | 12 | 15 |
| A7 | 72.73 | 9 | 13 | 35 |
| A8 | 93.33 | 1 | 12 | 16 |
| A9 | 62.07 | 11 | 15 | 21 |
| A10 | 82.76 | 5 | 14 | 34 |
>TRINITY_DN123360_c3_g2_i1 from sample A3 / Example spliced isoformAATTTACATCTATGAATGCTGATCTCCTCTCACACAACGCTCCTCTCTCTTCCTTATTATGTGGTTGCTCTCCTGGATAGAAGATGTCTCGGCTCCGCTCGAGGAGGACTTGCGAAGTCTTGAGAGGGATTTACTCTGCTCGAGAAGGACTTGCAGAAGTAAAGCTTCACGTAGATCTTGCAACGAAGGTCCACATGACA
AGAGCTATGCTACATCGACACGACACGGCAGAAAAACGTACTTCTTCTGCAGATTGTACTGCCAACCGTTTTAGAAAATCAGTGTATTTCGATGCAAATCATTTGCCACTGCAAGACATTTGCAATTGTCTGTGTTCTGATGAGGCATTCAAGCTCTCACGTCTCTTCTGCATTCAACTTAATTTGAGCAAGGGTTTTCG
AATCTCACATACTCTGCCGAACCCATCGGTGTATCGATGCAAATTATTTGCCGCTGCAAGATATTTGCAATAGGCTGTGTTCTGATGAGGCATTCAAGCTCTCACTTGTGTTCTGATGAGGCATGCGATATATAGTAAGGCATTGTGGATTAAGCTCTGCTGTGGCTTCGAGAAAAAAAATTCGAAAAAAGAGAGCAGGT
ACCGAAAATGCAGGAAAGGAAAATGAAAAATGAATGGAGAGCAGGACTTGCCCACTGATTTCCACATTCTATTAAACCCAAGGTTCGAATCCTGGCCTAGCACGGAATAACTGGGTTAAGGTTTGAAGTCAGAGCTTTAGTGCCATTTTAGAGGCATTTCGGGAATTGATTATCTTCAATGGGGCGAGAAGTTGAAGAAT
TGATGATAATATTTCTTGGTAGTAAGGATTTCGGGGGGGATTTTTTGCCCAGCCGCATTGCTGCTTCTTCTTTTCAAGAGCTACTAACGAATCATAATCATCTTAATCATCTTGCAATCATCTTAATCATCTTTGCAAGAATGACGACCGGATTTTTCGAGAAATTACAACAATGATAACCCAAGGTGGTGGTATTATGC
TGCGCTTCTGCGCTTCCTTCTTCGCTTTGGGAGCACTAGTAGTTTCTAAACAATTTGTTTCGCAGCTTCCTTCGTAGCTTTGGAAGTGCATGCGGTTTTTTCTAACTCTTTGCGTTTTCTCCTCTTCAAAAGAATTCGCAATTTCTGACACAATTTTATTTAGAGCTTTTTATGCTCTTCGGTCAGACTCTTGCACGGTT
AGTTTTCCCTTAGGGTCTCTGCGGCGTTTCCTCCTATCACTAAACAAACTCCTGTTGCTGAAAGCTGACGGGATGAGGGATTGTTGCCTCTACTGCTGCCGTTGTTTCAGTTTGTACA
>TRINITY_DN123360_c3_g2_i2 from sample A3 / Example unspliced isoform:AATTTACATCTATGAATGCTGATCTCCTCTCACACAACGCTCCTCTCTCTTCCTTATTATGTGGTTGCTCTCCTGGATAGAAGATGTCTCGGCTCCGCTCGAGGAGGACTTGCGAAGTCTTGAGAGGGATTTACTCTGCTCGAGAAGGACTTGCAGAAGTAAAGCTTCACGTAGATCTTGCAACGAAGGTCCACATGACA
AGAGCTATGCTACATCGACACGACACGGCAGAAAAACGTACTTCTTCTGCAGATTGTACTGCCAACCGTTTTAGAAAATCAGTGTATTTCGATGCAAATCATTTGCCACTGCAAGACATTTGCAATTGTCTGTGTTCTGATGAGGCATTCAAGCTCTCACGTCTCTTCTGCATTCAACTTAATTTGAGCAAGGGTTTTCG
AATCTCACATACTCTGCCGAACCCATCGGTGTATCGATGCAAATTATTTGCCGCTGCAAGATATTTGCAATAGGCTGTGTTCTGATGAGGCATTCAAGCTCTCACTTGTGTTCTGATGAGGCATGCGATATATAGTAAGGCATTGTGGATTAAGgtatttttctttgtggattaagttttttttaaagtttggagttaac
aaaaatgataagcatctcatcttgttgaaaacctttatagatttatttagCTCTGCTGTGGCTTCGAGAAAAAAAATTCGAAAAAAGAGAGCAGGTACCGAAAATGCAGGAAAGGAAAATGAAAAATGAATGGAGAGCAGGACTTGCCCACTGATTTCCACATTCTATTAAACCCAAGGTTCGAATCCTGGCCTAGCACG
GAATAACTGGGTTAAGGTTTGAAGTCAGAGCTTTGGTGCCATTTTAGAGGCGTTTCGGGAATTGATTATCTTTAATGGGGGCGAGAAGTTGAAGAATTGCTGATGATATTTGTTGGTAGTAAGGATTTCAGGGGGCATTTTTGGCCCGGCAGCATTGCTGCTTCTTCTTTTCAAGAGCTACTAACGAATCATAATCATCT
TTGCATTAATGATGACTGGATTTTTCGAGAAATTACAACAATGATAACCCAAGGTGGTGGTATTATGCTGCGCTTCTGCGCTTCCTTCTTCGCTTTGGGAGCACTAGTAGTTTCTAAACAATTTGTTTCGCAGCTTCCTTCGTAGCTTTGGAAGTGCATGCGGTTTTTTCTAACTCTTTGCGTTTTCTCCTCTTCAAAAG
AATTCGCAATTTCTGACACAATTTTATTTAGAGCTTTTTATGCTCTTCGGTCAGACTCTTGCACGGTTAGTTTTCCCTTAGGGTCTCTGCGGCGTTTCCTCCTATCACTAAACAAACTCCTGTTGCTGAAAGCTGACGGGATGAGGGATTGTTGCCTCTACTGCTGCCGTTGTTTCAGTTTGTACA