sp|Q6AWY4|GRF5_ORYSJ ----> Growth-regulating factor 5
Intron 1 GTACTGCTGA ... TGTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.31 | 1 | 3 | 21 |
| A2 | 80 | 2 | 7 | 9 |
| A3 | 60 | 5 | 9 | 6 |
| A4 | 100 | 0 | 3 | 3 |
| A5 | 100 | 0 | 2 | 4 |
| A6 | 75 | 12 | 29 | 43 |
| A7 | 78.26 | 5 | 12 | 24 |
| A8 | 83.78 | 3 | 8 | 23 |
| A9 | 76.47 | 4 | 16 | 10 |
| A10 | 81.82 | 1 | 5 | 4 |
>TRINITY_DN42062_c0_g2_i2 from sample A6 / Example spliced isoformCGGGCAGATGCCGCAGAACGGATGGTAAGAAATGGCGTTGTTCCAGGGACGCCGTTCCAGACCAAAAGTATTGTGAACGGCACATGAACAGAGGCCGTCACCGTTCAAGAAAGCCTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACAGTTGGGAGGACCGACACCCACCATCACCACCACCACCACCACAAAC
ACCAATACTCACAATGGTCCATCCCCTTCTTCTATCAGTCTGGCAGCTGCTCGTAACACCAACATTCACACCAGTAATCTTCGTCCCCCAGTTACTGTTAACAGTCACCCTCATCACCATCAGCAGCAGCAATCTCCTCTTGGAATGAATTCTAACCTCCTCCTACAAATCGCTCCTGGATCGGCCTCTTCAATGGGGCC
TGACAAAGAATACAGGTATGTGAATGGGATGAAAGGGGGAGACATTGATGAGCAAGTGTTTTTCTCTGATGTTTCTGGAAGCACAAGAGGGCTTGGTCAGGATTCCATGCTTTCATCAGTGAACAACAACGGGTGGCGTTCAAGTATGACATCTAAAGTGTCACAGGTTAAGACAGAACAGAATGGGTCTTTTATGCAGT
ACAATTCCCCACAGTTAAGAACACTTTTGGGCCAAGACTTTAGTCTCATGTCAGACGCAAGTCAGCAGATACCGCAGCAGCATTCATTCAGAAACTCAGGCTTCGGTGTTGTGGAGTCAGGAAATGTTGGTCGTGAAAGTGAAGGACAAGGTCAACCTCTGAGACATTTTTTTGATGACTGGCCTCGATCACGCGACGCA
TCCACACTTTCATGGTCAGATGTTGAGGAAGATCGATCAAACAGAAGCTCATCAACCACCCAACTTTCCATTTCAATTCCGATGGCATCCTCAGATTTTTCTGCAACAAATTCAAGCTCCCCTCGTGGCAAGTTATCACTTTCCCCTCTAAAATTATCTATGTCTAGAGACCATGATGATGATGATACTCATATGGGTCT
TGGAGTAGGCAACATAATTAATGAGGAGGAGAGGCATCGCCACAGCAATTGGGTACCCATTTCATGGGAGAGTCCAGTAGGTGGCCCGTTAGCAGAAGTTCTTCAATCTACTAGCGAATGCAAGAATGCTTCTTCAGGACTTCAACATAACTTTATGAATGAGAGGGAAGTTGGTGGTGGTGAC
>TRINITY_DN42062_c0_g2_i1 from sample A6 / Example unspliced isoform:GGGGTTTAGGCGTGGGGGGCTGAGGTATTTTCTGTTTTTTTGGGGTGTGTTTTTGGTATTTGATTTAAGAGGAGGATGGATTTTTCACATAGTTCTGTGTCGGTGTCTGGGAGTTTGTCTGAACTTGGGGATCACCGACACAGTAGAATGCCGGGGTTGTCATCCCCTACAGGAATTGGAATTGGAATGCTGTCACATGT
CTCTGTAGGCGATCCTTATAATAAACAATGTCGTCCAGCTTCTGAGATGGATTTAGACGAGAGAAGCAGAGGGCCCATCAAGATTGCACGCACTGATTCCTTCCCATGTAGACAACAGCAACACCATAACAGCAACAGCGGAAACAGCAACAGTGCTGCTGCTATTGGATCTCTTTTGAGAAGCAATTCTATAATGTCTG
ATGGACGTCTGACTAATTGTTCTCCTACCAATTCGAGTGCTTCTGATGGTGGTGGACTGATTACCAATGAAGGCTGTGTCACTGTGTCTGAACAAAGGCTCATGAGAAGTGACTCGGTGGTTTCTCCATATGGTGGTGGCGGGGGTGCAAGGACTCTGAGCTTTCATCCATCTTATAACTGTAATAAGCCTGCAGGTTTG
CCTCTGGGCATGTCGAGAGAAAATAGTGCAAGTCACATGGGAGGAATGCATGGGATTATAACAGGAACACGCCCACCTTTTACACAGTCCCAGTGGCAGGAGCTGGAACACCAGGCTTTGATTTTCAAATACATGATGGCTGGTGTTCAAGTGCCTCCGGACCTCATCATCCCCATAAGGAAGAGCGTGGCTGCCTTGTC
TGTTGCACTGTCGGCTGGATCTTATCATCCCAACATGGCATGGAATTCGTTCCAGTTGGGTTTTGCTAGCAATACAGACCCAGAGCCTGGAAGATGCCGAAGAACTGATGGCAAGAAATGGCGTTGCTCCAGAGACGTGGTTCCGGACCAAAAGTATTGCGAACGGCACATGCACAGGGGCCGTCATCGTTCAAGAAAGC
CTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACAGTTGGGAGGACCGACACCCACCATCACCACCACCACCACCACAAACACCAATACTCACAATGGTCCATCCCCTTCTTCTATCAGTCTGGCAGCTGCTCGTAACACCAACATTCACACCAGTAATCTTCGTCCCCCAGTTACTGTTAACAGTCACCCTCAT
CACCATCAGCAGCAGCAATCTCCTCTTGGAATGAATTCTAACCTCCTCCTACAAATCGCTCCTGGATCGGCCTCTTCAATGGGGCCTGACAAAGAATACAGGTATGTGAATGGGATGAAAGGGGGAGACATTGATGAGCAAGTGTTTTTCTCTGATGTTTCTGGAAGCACAAGAGGGCTTGGTCAGGATTCCATGCTTTC
ATCAGTGAACAACAACGGGTGGCGTTCAAGTATGACATCTAAAGTGTCACAGGTTAAGACAGAACAGAATGGGTCTTTTATGCAGTACAATTCCCCACAGTTAAGAACACTTTTGGGCCAAGACTTTAGTCTCATGTCAGACGCAAGTCAGCAGATACCGCAGCAGCATTCATTCAGAAACTCAGGCTTCGGTGTTGTGG
AGTCAGGAAATGTTGGTCGTGAAAGTGAAGGACAAGGTCAACCTCTGAGACATTTTTTTGATGACTGGCCTCGATCACGCGACGCATCCACACTTTCATGGTCAGATGTTGAGGAAGATCGATCAAACAGAAGCTCATCAACCACCCAACTTTCCATTTCAATTCCGATGGCATCCTCAGATTTTTCTGCAACAAATTCA
AGCTCCCCTCGTGGCAAGTTATCACTTTCCCCTCTAAAATTATCTATGTCTAGAGACCATGATGATGATGATACTCATATGGGTCTTGGAGTAGGCAACATAATTAATGAGGAGGAGAGGCATCGCCACAGCAATTGGGTACCCATTTCATGGGAGAGTCCAGTAGGTGGCCCGTTAGCAGAAGTTCTTCAATCTACTAG
CGAATGCAAGAATGCTTCTTCAGGACTTCAACATAACTTTATGAATGgtactgctgaccatggatgggaatgcagtccaagagacagccaaaacaataacaatagtttgagtcataataatgacattgcagtttcttcctccccaacaggtgttttgcaaaaaacatttgtttctctgtctgatagcactagcactggaa
gtagtccaagatcagcagcaccacccaaaaccacccagtctgccatactcgcctaaaatctatgaaaatctcatgacatctatcagttatatttttttatggagttgtttgtgattttgtcagggattatggacggtgtaattgtgtatagtttgttgtttctgtcatcttatttgtttggtagtccagagtggtgatta
taacactcttacctgcatgtttcccgttttcaattcctatgtattcattgtgttgcagAGAGGGAAGTTGGTGGTGGTGCTGGAAGAGTGGATACAACTAAATCCTCCGATTAAGCAATCCATTCCCACATGATTGCTCCAGTTGGAGGCTTCAGCTTCTACTACACATTTATCGTCATATATAAAGCCCCACGTACGCT
CTCTGTTCTCCAAAGCTGACTGGAAGCATTATCATCATTAACCCAAATATAGAATATCCTGATAGACATTGTGTAAAGTATCCACCCATCAGCTTCTTTATTTTGGAACTTTCAACTGCGATTATTAATATAACATTATCTTACGGGCTGCAGCTTGTCAGTGCTCAGCCATTTTGGTTTGTGATCAGGGCCTGAGGTTT
TGATTTAGACTTAATAATATTTTCTGTTGTTTGTATCGAAGAGCTATATGTAGTTACTCCTATCAGCAGGAGAGAGGTCGTCTGATAACTGATTTTCAAATGAAACTGTATTAGCTGGCCACAAAGCTCAAGCTTTGATATGGAAGCCTTGAGTTCCTTTTTATTTCTTTGCCTGAATGGAGCTTTGTTTGTTAATGTAA
ATTACAATTTACATCTTTCCTTTTGTGAGTTGAGTAGATCCTGCTGCTTTGTGGGACTCTGATTCGGTTTGTCTGAACTTGCATATATGGCAGAAGGTTGAATTCTTTGGCTTTGTATCCCAATCTTTCTGAAAG
Intron 2 GCAAGTTATC ... TGTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.61 | 15 | 11 | 21 |
| A2 | 47.83 | 6 | 2 | 9 |
| A3 | 33.33 | 8 | 2 | 6 |
| A4 | 33.33 | 6 | 3 | 3 |
| A5 | 40 | 6 | 4 | 4 |
| A6 | 37.5 | 45 | 11 | 43 |
| A7 | 53.12 | 15 | 10 | 24 |
| A8 | 42.42 | 19 | 5 | 23 |
| A9 | 32.26 | 21 | 10 | 10 |
| A10 | 25 | 18 | 8 | 4 |
>TRINITY_DN42062_c0_g2_i3 from sample A6 / Example spliced isoformGGGGTTTAGGCGTGGGGGGCTGAGGTATTTTCTGTTTTTTTGGGGTGTGTTTTTGGTATTTGATTTAAGAGGAGGATGGATTTTTCACATAGTTCTGTGTCGGTGTCTGGGAGTTTGTCTGAACTTGGGGATCACCGACACAGTAGAATGCCGGGGTTGTCATCCCCTACAGGAATTGGAATTGGAATGCTGTCACATGT
CTCTGTAGGCGATCCTTATAATAAACAATGTCGTCCAGCTTCTGAGATGGATTTAGACGAGAGAAGCAGAGGGCCCATCAAGATTGCACGCACTGATTCCTTCCCATGTAGACAACAGCAACACCATAACAGCAACAGCGGAAACAGCAACAGTGCTGCTGCTATTGGATCTCTTTTGAGAAGCAATTCTATAATGTCTG
ATGGACGTCTGACTAATTGTTCTCCTACCAATTCGAGTGCTTCTGATGGTGGTGGACTGATTACCAATGAAGGCTGTGTCACTGTGTCTGAACAAAGGCTCATGAGAAGTGACTCGGTGGTTTCTCCATATGGTGGTGGCGGGGGTGCAAGGACTCTGAGCTTTCATCCATCTTATAACTGTAATAAGCCTGCAGGTTTG
CCTCTGGGCATGTCGAGAGAAAATAGTGCAAGTCACATGGGAGGAATGCATGGGATTATAACAGGAACACGCCCACCTTTTACACAGTCCCAGTGGCAGGAGCTGGAACACCAGGCTTTGATTTTCAAATACATGATGGCTGGTGTTCAAGTGCCTCCGGACCTCATCATCCCCATAAGGAAGAGCGTGGCTGCCTTGTC
TGTTGCACTGTCGGCTGGATCTTATCATCCCAACATGGCATGGAATTCGTTCCAGTTGGGTTTTGCTAGCAATACAGACCCAGAGCCTGGAAGATGCCGAAGAACTGATGGCAAGAAATGGCGTTGCTCCAGAGACGTGGTTCCGGACCAAAAGTATTGCGAACGGCACATGCACAGGGGCCGTCATCGTTCAAGAAAGC
CTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACAGTTGGGAGGACCGACACCCACCATCACCACCACCACCACCACAAACACCAATACTCACAATGGTCCATCCCCTTCTTCTATCAGTCTGGCAGCTGCTCGTAACACCAACATTCACACCAGTAATCTTCGTCCCCCAGTTACTGTTAACAGTCACCCTCAT
CACCATCAGCAGCAGCAATCTCCTCTTGGAATGAATTCTAACCTCCTCCTACAAATCGCTCCTGGATCGGCCTCTTCAATGGGGCCTGACAAAGAATACAGGTATGTGAATGGGATGAAAGGGGGAGACATTGATGAGCAAGTGTTTTTCTCTGATGTTTCTGGAAGCACAAGAGGGCTTGGTCAGGATTCCATGCTTTC
ATCAGTGAACAACAACGGGTGGCGTTCAAGTATGACATCTAAAGTGTCACAGGTTAAGACAGAACAGAATGGGTCTTTTATGCAGTACAATTCCCCACAGTTAAGAACACTTTTGGGCCAAGACTTTAGTCTCATGTCAGACGCAAGTCAGCAGATACCGCAGCAGCATTCATTCAGAAACTCAGGCTTCGGTGTTGTGG
AGTCAGGAAATGTTGGTCGTGAAAGTGAAGGACAAGGTCAACCTCTGAGACATTTTTTTGATGACTGGCCTCGATCACGCGACGCATCCACACTTTCATGGTCAGATGTTGAGGAAGATCGATCAAACAGAAGCTCATCAACCACCCAACTTTCCATTTCAATTCCGATGGCATCCTCAGATTTTTCTGCAACAAATTCA
AGCTCCCCTCGTGAGAGGGAAGTTGGTGGTGGTGCTGGAAGAGTGGATACAACTAAATCCTCCGATTAAGCAATCCATTCCCACATGATTGCTCCAGTTGGAGGCTTCAGCTTCTACTACACATTTATCGTCATATATAAAGCCCCACGTACGCTCTCTGTTCTCCAAAGCTGACTGGAAGCATTATCATCATTAACCCA
AATATAGAATATCCTGATAGACATTGTGTAAAGTATCCACCCATCAGCTTCTTTATTTTGGAACTTTCAACTGCGATTATTAATATAACATTATCTTACGGGCTGCAGCTTGTCAGTGCTCAGCCATTTTGGTTTGTGATCAGGGCCTGAGGTTTTGATTTAGACTTAATAATATTTTCTGTTGTTTGTATCGAAGAGCT
ATATGTAGTTACTCCTATCAGCAGGAGAGAGGTCGTCTGATAACTGATTTTCAAATGAAACTGTATTAGCTGGCCACAAAGCTCAAGCTTTGATATGGAAGCCTTGAGTTCCTTTTTATTTCTTTGCCTGAATGGAGCTTTGTTTGTTAATGTAAATTACAATTTACATCTTTCCTTTTGTGAGTTGAGTAGATCCTGCT
GCTTTGTGGGACTCTGATTCGGTTTGTCTGAACTTGCATATATGGCAGAAGGTTGAATTCTTTGGCTTTGTATCCCAATCTTTCTGAAAG
>TRINITY_DN42062_c0_g2_i1 from sample A6 / Example unspliced isoform:GGGGTTTAGGCGTGGGGGGCTGAGGTATTTTCTGTTTTTTTGGGGTGTGTTTTTGGTATTTGATTTAAGAGGAGGATGGATTTTTCACATAGTTCTGTGTCGGTGTCTGGGAGTTTGTCTGAACTTGGGGATCACCGACACAGTAGAATGCCGGGGTTGTCATCCCCTACAGGAATTGGAATTGGAATGCTGTCACATGT
CTCTGTAGGCGATCCTTATAATAAACAATGTCGTCCAGCTTCTGAGATGGATTTAGACGAGAGAAGCAGAGGGCCCATCAAGATTGCACGCACTGATTCCTTCCCATGTAGACAACAGCAACACCATAACAGCAACAGCGGAAACAGCAACAGTGCTGCTGCTATTGGATCTCTTTTGAGAAGCAATTCTATAATGTCTG
ATGGACGTCTGACTAATTGTTCTCCTACCAATTCGAGTGCTTCTGATGGTGGTGGACTGATTACCAATGAAGGCTGTGTCACTGTGTCTGAACAAAGGCTCATGAGAAGTGACTCGGTGGTTTCTCCATATGGTGGTGGCGGGGGTGCAAGGACTCTGAGCTTTCATCCATCTTATAACTGTAATAAGCCTGCAGGTTTG
CCTCTGGGCATGTCGAGAGAAAATAGTGCAAGTCACATGGGAGGAATGCATGGGATTATAACAGGAACACGCCCACCTTTTACACAGTCCCAGTGGCAGGAGCTGGAACACCAGGCTTTGATTTTCAAATACATGATGGCTGGTGTTCAAGTGCCTCCGGACCTCATCATCCCCATAAGGAAGAGCGTGGCTGCCTTGTC
TGTTGCACTGTCGGCTGGATCTTATCATCCCAACATGGCATGGAATTCGTTCCAGTTGGGTTTTGCTAGCAATACAGACCCAGAGCCTGGAAGATGCCGAAGAACTGATGGCAAGAAATGGCGTTGCTCCAGAGACGTGGTTCCGGACCAAAAGTATTGCGAACGGCACATGCACAGGGGCCGTCATCGTTCAAGAAAGC
CTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACAGTTGGGAGGACCGACACCCACCATCACCACCACCACCACCACAAACACCAATACTCACAATGGTCCATCCCCTTCTTCTATCAGTCTGGCAGCTGCTCGTAACACCAACATTCACACCAGTAATCTTCGTCCCCCAGTTACTGTTAACAGTCACCCTCAT
CACCATCAGCAGCAGCAATCTCCTCTTGGAATGAATTCTAACCTCCTCCTACAAATCGCTCCTGGATCGGCCTCTTCAATGGGGCCTGACAAAGAATACAGGTATGTGAATGGGATGAAAGGGGGAGACATTGATGAGCAAGTGTTTTTCTCTGATGTTTCTGGAAGCACAAGAGGGCTTGGTCAGGATTCCATGCTTTC
ATCAGTGAACAACAACGGGTGGCGTTCAAGTATGACATCTAAAGTGTCACAGGTTAAGACAGAACAGAATGGGTCTTTTATGCAGTACAATTCCCCACAGTTAAGAACACTTTTGGGCCAAGACTTTAGTCTCATGTCAGACGCAAGTCAGCAGATACCGCAGCAGCATTCATTCAGAAACTCAGGCTTCGGTGTTGTGG
AGTCAGGAAATGTTGGTCGTGAAAGTGAAGGACAAGGTCAACCTCTGAGACATTTTTTTGATGACTGGCCTCGATCACGCGACGCATCCACACTTTCATGGTCAGATGTTGAGGAAGATCGATCAAACAGAAGCTCATCAACCACCCAACTTTCCATTTCAATTCCGATGGCATCCTCAGATTTTTCTGCAACAAATTCA
AGCTCCCCTCGTGgcaagttatcactttcccctctaaaattatctatgtctagagaccatgatgatgatgatactcatatgggtcttggagtaggcaacataattaatgaggaggagaggcatcgccacagcaattgggtacccatttcatgggagagtccagtaggtggcccgttagcagaagttcttcaatctactag
cgaatgcaagaatgcttcttcaggacttcaacataactttatgaatggtactgctgaccatggatgggaatgcagtccaagagacagccaaaacaataacaatagtttgagtcataataatgacattgcagtttcttcctccccaacaggtgttttgcaaaaaacatttgtttctctgtctgatagcactagcactggaa
gtagtccaagatcagcagcaccacccaaaaccacccagtctgccatactcgcctaaaatctatgaaaatctcatgacatctatcagttatatttttttatggagttgtttgtgattttgtcagggattatggacggtgtaattgtgtatagtttgttgtttctgtcatcttatttgtttggtagtccagagtggtgatta
taacactcttacctgcatgtttcccgttttcaattcctatgtattcattgtgttgcagAGAGGGAAGTTGGTGGTGGTGCTGGAAGAGTGGATACAACTAAATCCTCCGATTAAGCAATCCATTCCCACATGATTGCTCCAGTTGGAGGCTTCAGCTTCTACTACACATTTATCGTCATATATAAAGCCCCACGTACGCT
CTCTGTTCTCCAAAGCTGACTGGAAGCATTATCATCATTAACCCAAATATAGAATATCCTGATAGACATTGTGTAAAGTATCCACCCATCAGCTTCTTTATTTTGGAACTTTCAACTGCGATTATTAATATAACATTATCTTACGGGCTGCAGCTTGTCAGTGCTCAGCCATTTTGGTTTGTGATCAGGGCCTGAGGTTT
TGATTTAGACTTAATAATATTTTCTGTTGTTTGTATCGAAGAGCTATATGTAGTTACTCCTATCAGCAGGAGAGAGGTCGTCTGATAACTGATTTTCAAATGAAACTGTATTAGCTGGCCACAAAGCTCAAGCTTTGATATGGAAGCCTTGAGTTCCTTTTTATTTCTTTGCCTGAATGGAGCTTTGTTTGTTAATGTAA
ATTACAATTTACATCTTTCCTTTTGTGAGTTGAGTAGATCCTGCTGCTTTGTGGGACTCTGATTCGGTTTGTCTGAACTTGCATATATGGCAGAAGGTTGAATTCTTTGGCTTTGTATCCCAATCTTTCTGAAAG