SAMPLE:  SCE03_MKRN250024226-1A_22VNWKLT4_L6
BBDUK2, sample SCE03_MKRN250024226-1A_22VNWKLT4_L6: 13522241.0 raw reads,  13207636.0 filtered reads,  97.67 % of raw reads kept
Bowtie2, sample SCE03_MKRN250024226-1A_22VNWKLT4_L6: 13158725 clean reads,  99.63 % of filtered reads kept 97.31 % of raw reads kept

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SAMPLE:  SCP03_MKRN250024229-1A_22VNWKLT4_L6
BBDUK2, sample SCP03_MKRN250024229-1A_22VNWKLT4_L6: 17987560.0 raw reads,  17579587.0 filtered reads,  97.73 % of raw reads kept
Bowtie2, sample SCP03_MKRN250024229-1A_22VNWKLT4_L6: 14447149 clean reads,  82.18 % of filtered reads kept 80.32 % of raw reads kept

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SAMPLE:  SCP02_MKRN250024228-1A_22VTJNLT4_L5
BBDUK2, sample SCP02_MKRN250024228-1A_22VTJNLT4_L5: 19190562.0 raw reads,  18663768.0 filtered reads,  97.25 % of raw reads kept
Bowtie2, sample SCP02_MKRN250024228-1A_22VTJNLT4_L5: 15683124 clean reads,  84.03 % of filtered reads kept 81.72 % of raw reads kept

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SAMPLE:  SCE02_MKRN250024225-1A_22VTJNLT4_L5
BBDUK2, sample SCE02_MKRN250024225-1A_22VTJNLT4_L5: 15042968.0 raw reads,  14638917.0 filtered reads,  97.31 % of raw reads kept
Bowtie2, sample SCE02_MKRN250024225-1A_22VTJNLT4_L5: 14593360 clean reads,  99.69 % of filtered reads kept 97.01 % of raw reads kept

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SAMPLE:  SCE01_MKRN250024224-1A_22VNWKLT4_L6
BBDUK2, sample SCE01_MKRN250024224-1A_22VNWKLT4_L6: 17891069.0 raw reads,  17441573.0 filtered reads,  97.49 % of raw reads kept
Bowtie2, sample SCE01_MKRN250024224-1A_22VNWKLT4_L6: 17379127 clean reads,  99.64 % of filtered reads kept 97.14 % of raw reads kept

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SAMPLE:  SCE02_MKRN250024225-1A_22VNWKLT4_L6
BBDUK2, sample SCE02_MKRN250024225-1A_22VNWKLT4_L6: 15769441.0 raw reads,  15379071.0 filtered reads,  97.52 % of raw reads kept
Bowtie2, sample SCE02_MKRN250024225-1A_22VNWKLT4_L6: 15330529 clean reads,  99.68 % of filtered reads kept 97.22 % of raw reads kept

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SAMPLE:  SCE01_MKRN250024224-1A_22VTJNLT4_L5
BBDUK2, sample SCE01_MKRN250024224-1A_22VTJNLT4_L5: 6599388.0 raw reads,  6419562.0 filtered reads,  97.28 % of raw reads kept
Bowtie2, sample SCE01_MKRN250024224-1A_22VTJNLT4_L5: 6397144 clean reads,  99.65 % of filtered reads kept 96.94 % of raw reads kept

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SAMPLE:  SCP01_MKRN250024227-1A_22VNWKLT4_L6
BBDUK2, sample SCP01_MKRN250024227-1A_22VNWKLT4_L6: 14683260.0 raw reads,  14321599.0 filtered reads,  97.54 % of raw reads kept
Bowtie2, sample SCP01_MKRN250024227-1A_22VNWKLT4_L6: 11913783 clean reads,  83.19 % of filtered reads kept 81.14 % of raw reads kept

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SAMPLE:  SCP01_MKRN250024227-1A_22VTJNLT4_L5
BBDUK2, sample SCP01_MKRN250024227-1A_22VTJNLT4_L5: 25638563.0 raw reads,  25001360.0 filtered reads,  97.51 % of raw reads kept
Bowtie2, sample SCP01_MKRN250024227-1A_22VTJNLT4_L5: 20826853 clean reads,  83.3 % of filtered reads kept 81.23 % of raw reads kept

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SAMPLE:  SCP02_MKRN250024228-1A_22VNWKLT4_L6
BBDUK2, sample SCP02_MKRN250024228-1A_22VNWKLT4_L6: 19087678.0 raw reads,  18600499.0 filtered reads,  97.45 % of raw reads kept
Bowtie2, sample SCP02_MKRN250024228-1A_22VNWKLT4_L6: 15599743 clean reads,  83.87 % of filtered reads kept 81.73 % of raw reads kept

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SAMPLE:  SCE03_MKRN250024226-1A_22VTJNLT4_L5
BBDUK2, sample SCE03_MKRN250024226-1A_22VTJNLT4_L5: 7159795.0 raw reads,  6997166.0 filtered reads,  97.73 % of raw reads kept
Bowtie2, sample SCE03_MKRN250024226-1A_22VTJNLT4_L5: 6971875 clean reads,  99.64 % of filtered reads kept 97.38 % of raw reads kept

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SAMPLE:  SCP03_MKRN250024229-1A_22VTJNLT4_L5
BBDUK2, sample SCP03_MKRN250024229-1A_22VTJNLT4_L5: 6249680.0 raw reads,  6094237.0 filtered reads,  97.51 % of raw reads kept
Bowtie2, sample SCP03_MKRN250024229-1A_22VTJNLT4_L5: 5024042 clean reads,  82.44 % of filtered reads kept 80.39 % of raw reads kept

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Samples with > 20% reads discarded:
