wgEncodeBroadHistoneGm12878CtcfStdRawDataRep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	wgEncodeBroadHistoneGm12878CtcfStdRawDataRep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17949455
Sequences flagged as poor quality	0
Sequence length	47-51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	36009	0.2006133333853312	No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	18400	0.10251007621122758	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGACGAT	1580	104.65214	45
GCGACGA	1785	92.95898	44
CTACGTA	2320	80.2401	43
AGCGACG	2215	78.25819	43
GAGCGAC	2330	74.72998	42
ACTACGT	2585	73.62404	42
CTCGTCA	2755	56.587624	42
TACGCGA	4365	39.833378	2
ACGTACG	6370	39.723587	9
ACGCGTA	6425	39.33993	13
TACGCGT	6425	39.161373	12
CGCGTAT	6510	39.147377	14
GACGTAC	6495	39.05355	8
GTACGCG	6510	39.039883	11
CGTACGC	6555	38.60883	10
CGTACGT	3795	37.860928	35
TGACGTA	6680	37.500137	7
GATATGT	4990	37.441185	43
ACGAGCG	4700	37.116287	40
GCGTACG	3800	37.073757	34