BLASTN 2.2.26 [Sep-21-2011]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CNT0011548
(66 letters)
Database: lncrnas.fasta
45,117 sequences; 52,244,317 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CNT0011548 131 8e-31
>CNT0011548
Length = 721
Score = 131 bits (66), Expect = 8e-31
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 ggcccatttgcacctgtcctaagataaactaattttccgcgagggtttaggcccacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcccatttgcacctgtcctaagataaactaattttccgcgagggtttaggcccacttct 60
Query: 61 tgcatt 66
||||||
Sbjct: 61 tgcatt 66
Database: lncrnas.fasta
Posted date: Oct 29, 2015 4:42 PM
Number of letters in database: 52,244,317
Number of sequences in database: 45,117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 45117
Number of Hits to DB: 28,203
Number of extensions: 1238
Number of successful extensions: 1238
Number of sequences better than 1.0e-06: 1
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 1
Length of query: 66
Length of database: 52,244,317
Length adjustment: 16
Effective length of query: 50
Effective length of database: 51,522,445
Effective search space: 2576122250
Effective search space used: 2576122250
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 11 (22.3 bits)
S2: 26 (52.0 bits)